PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g05020.1
Common NameLR48_Vigan11g167300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 168aa    MW: 18153.1 Da    PI: 6.9597
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g05020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.8e-2095145255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++kGVr+++ +g+++AeIrdp++ng  +r++lg++++ae Aa a+++a+ +++g
  Vang08g05020.1  95 RFKGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYDSAESAALAYDRAAFEMRG 145
                     69*******.***********9998..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.06E-2994155No hitNo description
PfamPF008478.3E-1595145IPR001471AP2/ERF domain
PROSITE profilePS5103223.6395153IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2295154IPR016177DNA-binding domain
SMARTSM003802.1E-3695159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-3195154IPR001471AP2/ERF domain
PRINTSPR003671.6E-1296107IPR001471AP2/ERF domain
PRINTSPR003671.6E-12135155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MNFNTTLESH DYALLQSIQR FLLDDTQDLN ALTAVLAAPN AVSPVGSGGG STSTLFTTSI  60
NMEERPTTST EAREDPTAAR GEFTEAGGGH ASYQRFKGVR RRPWGKFAAE IRDPKKNGAR  120
VWLGTYDSAE SAALAYDRAA FEMRGSKAKL NFPHLIGCHE PSQKENG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2994160470ATERF1
3gcc_A1e-2994160470ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516184.11e-103PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K13e-39ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A0L9VV251e-123A0A0L9VV25_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SVJ21e-123A0A0S3SVJ2_PHAAN; Uncharacterized protein
STRINGGLYMA07G14070.21e-64(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-39ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]